Originally posted by Helmholtz
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Looking back at those threads, the difference made is rather subtle, it's not as though raising the pickups causes the guitar's output to jump an octave or two. But also, there is beating in the harmonics, and the rate of beating would vary depending on the degree of string pull. This research isn't conclusive, the testing should be conducted multiple times with multiple guitars in order to establish trends, but there's an enormous time cost in that. I was hoping that maybe someone with a background in physics might come along and explain what was being seen with the string pull and explain it well enough that further testing might not be critical to gain an understanding of how pickup height effects tone. What I can say for sure is that the effects are complex enough that they can't be summed up with simple adjectives.
Another fact that rarely gets mentioned, and is probably never noticed, but raising one pickup effects the tonal outcome of the others, as it disturbs the movement of the guitar string from the perspective of all of the pickups. That being said, it also seems to be that the way in which a pickup disturbs the string movement is most apparent from that pickup, for example, a bridge pickup's magnetic pull excites higher level harmonics, and the bridge pickup also receives more higher level harmonics due to it's position, and the the same is true for the neck pickup and it's interference and reception of lower harmonics, which would contribute to the mutual effects of pickup height being difficult to notice.
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