If you can, mesure the magnets "strength" with a gauss meter before and after the change, you will find more or less the same result, exept a pole inversion of course.
And, remember, you can always control the gauss level if you find any difference.
Just get some strong rare earth magnets or similar. Almost at the bottom of this page: http://www.stewmac.com/freeinfo/Elec...ng/i-5967.html
you will find info on magnetizing pickups. Use that as a guide and just reverse the polarity
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